Search results for "X-ray study"

showing 10 items of 10 documents

4,4-Di-fluoro-2,3;5,6-bis-(tetra-methylene)-4-bora-3a,4a-di-aza-s-indacene (LD540).

2014

The title compound, C18H21BF2N2, is a lipophilic dye based on a BODIPY fluorophore backbone, which was developed for microscopic imaging of lipid droplets; the molecule has a planar BODIPY core [dihedral angle between the pyrrole rings = 2.3 (3)°] and two tetramethylene substituents at the 2,3- and 5,6-positions in a half-chair conformation. One of the tetramethylene substituents is disordered over two two sets of sites with site occupancies of 0.5. In the crystal, pairs of C—H...F interactions link the molecules into inversion dimers. Neighbouring dimers are linked by further C—H...F interactions, forming an infinite array. C—H...π and π–π [centroid–centroid distance = 4.360 (3) Å] interac…

BODIBYDimerDihedral angleBioinformaticsOrganic PapersCrystallcsh:Chemistrychemistry.chemical_compoundBODIPYlipophilic dyesingle-crystal X-ray studyGeneral Materials Scienceta116Pyrrolelipofiilinen väriaineyksikideröntgendiffraktiotutkimusbiologyGeneral ChemistryCondensed Matter Physicsbiology.organism_classificationLD540Crystallographychemistrylcsh:QD1-999Microscopic imagingTetraBODIPYActa crystallographica. Section E, Structure reports online
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N-[2-(2,2-Di­methyl­propanamido)­pyrimidin-4-yl]-2,2-di­methyl­propanamide n-hexane 0.25-solvate hemihydrate

2013

The asymmetric unit of the title compound, C14H22N4O2·0.25C6H14·0.5H2O, contains two independent molecules of 2,4-bis(pivaloylamino)pyrimidine (M) with similar conformations, one water molecule and one-halfn-hexane solvent molecule situated on an inversion center. In one independentMmolecule, one of the twotert-butyl groups is rotationally disordered between two orientations in a 3:2 ratio. Then-hexane solvent molecule is disordered between two conformations in the same ratio. The water molecule bridges two independentMmoleculesviaO—H...O, N—H...O and O—H...N hydrogen bonds into a 2M·H2O unit, and these units are further linked by N—H...N hydrogen bonds into chains running in the [010] dire…

CrystallographyHydrogen bondHemihydrateGeneral Chemistrydata-to-parameter ratio = 14.2T = 123 KR factor = 0.079Condensed Matter PhysicsBioinformaticsPropanamideOrganic PapersSolventHexaneCrystallographychemistry.chemical_compoundwR factor = 0.164chemistryQD901-999mean σ(C–C) = 0.006 Åsingle-crystal X-ray studyGeneral Materials Scienceta116disorder in main residue
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cis-Dichloridobis(2-isocyanophenyl 4-methoxybenzoate)palladium(II) chloroform monosolvate

2012

In the title compound, [PdCl2(C15H11NO3)2]·CHCl3, the PdII atom adopts a slightly distorted square-planar coordination geometry composed of two Cl atoms in cis positions and two C atoms from isocyanophenyl ligands. The molecular conformation is stabilized by π–π stacking interactions [shortest centroid–centroid distance = 3.600 (1) Å] between substituted benzene rings of different ligands. The crystal packing is characterized by C—H...O and C—H...Cl interactions involving the chloroform solvent molecules.

Metal-Organic PapersCrystallographyChemistryStackingchemistry.chemical_elementGeneral ChemistryCondensed Matter PhysicsBioinformaticsMedicinal chemistrychloroform solvent moleculesSolventCrystalchemistry.chemical_compoundmolecular conformationQD901-999Atomsingle-crystal X-ray studyGeneral Materials ScienceBenzeneta116crystal packingCoordination geometryPalladiumActa Crystallographica. Section E: Structure Reports Online
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(S)-2-[(2-Hydroxybenzyl)azaniumyl]-4-(methylsulfanyl)butanoate

2011

The zwitterionic title compound, C12H17NO3S, is a reduced Schiff base derived from (S)-N-(2-hydroxybenzylidene)methionine. An intramolecular interaction between the N—H and carboxylate groups forms a roughly planar (r.m.s. deviation = 0.1405 Å) five-membered ring containing the H(N), N, Cα, C(carboxylate) and O atoms in a pentagonal conformation. In the crystal, a supramolecular triangle-shaped motif is generated by molecules held together by O—H...O and N—H...O hydrogen bonds.

Schiff baseCrystallographyChemistryStereochemistryHydrogen bondGeneral ChemistrySettore CHIM/06 - Chimica OrganicaCondensed Matter PhysicsRing (chemistry)Organic PapersCrystalConformation Crystal structure AMINO COMPLEXES DERIVATIVES LIGANDS ACIDS MODELchemistry.chemical_compoundQD901-999Settore CHIM/03 - Chimica Generale E Inorganicasingle-crystal X-ray studyGeneral Materials Science
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1,4-Dimethyl-3-phenyl-3H-pyrazolo[3,4-c]isoquinolin-5(4H)-one

2008

The title compound, C18H15N3O, is the product of the thermal decomposition of the diazonium salt derived from 2-amino-N-methyl-N-(3-methyl-1-phenyl-1H-pyrazol-5-yl)benzamide. It is characterized by a trans orientation of the methyl groups with respect to the tricyclic ring system. The molecule has a nearly planar phenylpyrazolo[3,4-c]isoquinolin-5-one system, the largest deviation from the mean plane being 0.066 (2) angstrom for the O atom. The dihedral angle between the phenyl substituent and the heterotricycle is 67 (1)degrees. The packing is stabilized by C-H center dot center dot center dot N hydrogen-bond interactions, with the formation of molecular chains along the c axis.

Thermal decompositionSubstituentAtom (order theory)General ChemistryDihedral angleCondensed Matter PhysicsRing (chemistry)BioinformaticsOrganic PapersSettore CHIM/08 - Chimica Farmaceuticalcsh:Chemistrychemistry.chemical_compoundCrystallographylcsh:QD1-999chemistrysingle-crystal X-ray studyGeneral Materials ScienceBenzamideActa Crystallographica Section E Structure Reports Online
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Semisynthetic roxburghin tetramethyl ether

2008

The title molecule, (E)-2,3′,4,5-tetramethoxystilbene, C18H20O4, is virtually planar. The angle between the two benzene rings is 4.06 (6)°. The intermolecular interactions present in the structure are weak. There are C—H...O hydrogen bonds and C—H...π-electron ring interactions. The molecules are ordered into planes that are parallel to (overline{1}01). The distance between adjacent planes is about 3.3 Å and therefore π–π electron interactions between the aromatic planes are also plausible.

biologyHydrogen bondagrovoc:c_35739ÉteresEtherGeneral ChemistryCondensed Matter PhysicsBioinformaticsbiology.organism_classificationRing (chemistry)Organic Paperslcsh:ChemistryCrystallographychemistry.chemical_compoundlcsh:QD1-999chemistryTetraGeneral Materials ScienceSingle-crystal X-ray studyBenzeneEthersActa Crystallographica Section E Structure Reports Online
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5-Amino-1-phenyl-3-trifluoromethyl-1H-pyrazole-4-carboxylic acid

2009

In the title compound, C11H8F3N3O2, there are two molecules in the asymmetric unit wherein the phenyl rings make dihedral angles of 65.3 (2) and 85.6 (2)° with the pyrazole rings. In the crystal, pairs of molecules are held together by O—H...O hydrogen bonds between the carboxyl groups, forming a centrosymmetric dimer with an R22(8) motif. Intramolecular N—H...O interactions are also present.

chemistry.chemical_classificationHydrogen bondDimerCarboxylic acidGeneral ChemistryPyrazoleDihedral angle010402 general chemistry010403 inorganic & nuclear chemistryCondensed Matter PhysicsBioinformaticsOrganic Papers01 natural sciencesMedicinal chemistry3. Good health0104 chemical sciencesCrystallcsh:Chemistrychemistry.chemical_compoundchemistrylcsh:QD1-999X-ray studyGeneral Materials ScienceActa Crystallographica Section E
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6-Amino-2-(pivaloylamino)pyridinium benzoate

2013

In the crystal structure of the title salt, C10H16N3O+·C7H5O2−, the cations and anions are linked to each other via N—H⋯O hydrogen bonds, forming infinite chains running along [010]. The crystal structure also features C—H⋯O and π–π stacking inter­actions, which assemble the chains into supra­molecular layers parallel to (100). The π–π stacking inter­actions are observed between the pyridine rings of inversion-related cations with a centroid–centroid distance of 3.867 (2) Å. Financial support from the National Science Centre in Kraków (grant No. NCN204 356840) is gratefully acknowledged. Academy Professor Kari Rissanen (Academy of Finland grant Nos. 122350, 140718, 265328 and 263256) and th…

mean (C–C) = 0.003 A˚StackingSalt (chemistry)Crystal structureT = 123 KBioinformaticsOrganic Paperschemistry.chemical_compoundwR factor = 0.141Pyridinesingle-crystal X-ray study6-Amino-2-(pivaloylamino)pyridinium benzoateGeneral Materials Science6-amino-2-(pivaloyyli)pyridiniumbentsoaattita116chemistry.chemical_classificationyksikideröntgendiffraktiotutkimusCrystallographyHydrogen bond6-amino-2-(pivaloyyli)pyridiinibentsoehappo6-amino-2-(pivaloylamino)pyridineR factor = 0.066General ChemistryCondensed Matter PhysicsCrystallographydata-to-parameter ratio = 16.9chemistryQD901-999PyridiniumActa Crystallographica Section E-Structure Reports Online
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2-(3,5-Dimethyl-1H-pyrazol-1-yl)-2-hydroxyimino-N0-[1-(pyridin-2-yl)ethylethylidene]

2012

In the title compound, C14H16N6O2, the dihedral angles formed by the mean plane of the acetohydrazide group [maximum deviation 0.0629 (12) A˚ ] with the pyrazole and pyridine rings are 81.62 (6) and 38.38 (4) respectively. In the crystal, molecules are connected by N—HO and O—HN hydrogen bonds into supramolecular chains extending parallel to the c-axis direction. peerReviewed

pyridine ringsacetohydrazide groupsingle-crystal X-ray studydihedral anglessupramolecular chains
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Diammine{N-[2-(hydroxyimino)propionyl]-N'-[2-(oxidoimino)propionyl]propane-1,3-diaminido-κ4 N,N',N'',N'''}iron(III)

2012

In the title compound, [Fe(C9H13N4O4)(NH3)2], the FeIII atom, lying on a mirror plane, is coordinated by four N atoms of a triply deprotonated tetradentate N-[2-(hydroxyimino)- propionyl]-N0 -[2-(oxidoimino)propionyl]propane-1,3-diaminide ligand in the equatorial plane and two N atoms of two ammonia molecules at the axial positions in a distorted octahedral geometry. A short intramolecular O—HO hydrogen bond between the cis-disposed oxime O atoms stabilizes the pseudo-macrocyclic configuration of the ligand. In the crystal, molecules are linked by N—HO hydrogen bonds into a three-dimensional network. The ligand has a mirror-plane symmetry. One of the methylene groups of the propane bridge i…

single-crystal X-ray studydisorder in main residue
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